Home   |  About Startbioinfo |   Other web-portals | BdataA  | 

Categories of resources

Suggested Readings
 
 
A compilation and categorization of next-generation sequencing resources

QSeq

Tool nameQSeq
URLhttp://www.dnastar.com/t-nextgen-qseq.aspx
Important features1. QSeq is DNASTAR's Next-Gen application for RNA-Seq, ChIP-Seq, and miRNA alignment and visualize Genomes with High Capacity, High Speed Assembler. 2. QSeq is fully integrated with ArrayStar, enabling you to take advantage of its powerful visualization and analytical tools, including, using Gene Ontology (GO) annotations for ontology comparisons and gene characterization. 3. Using QSeq, researchers can select gene sets and export associated reads through the rest of the DNASTAR software pipeline for sequence assembly, alignment, and detailed analysis.
Citations
Year of publicationNot available
Rank by usage frequency100
Comments
FunctionAlignment/Mapping, Visualization, ChIP seq analysis, RNA seq analysis
CategoryDownloadable
LicenseGNU GPL V3
Status
Input file formatSAM, BAM, GFF, BED
Output file format
Operating system Windows 7, Windows Vista, Windows XP SP2, Mac OS X 10.6 with Parallels Desktop
Operating language
PlatformRoche NimbleGen, Illumina/Solexa, Roche 454, ABI SOLiD, Helicos, Sanger
Maintained byOregon State University
Downloadable file format
Submission file format

copyright © BdataA; all rights reserved